I would wait and get a new ball, you will not be able to trust the drilling if you plug and redrill it because you will never know for sure if the fingers and thumb along with any weight holes that were plugged are affecting your ball motion, the only way to know for sure is to figure out which ball you want to have a different motion on it, then buy another one with the proper pin to cg distance and top weight to allow you to drill it the way you want.
The reason I say this is the plug material probably weighs the same as the core materials, it will not have the same density and is basicly coverstock material that is poured in the holes, so in effect instead of having a light bulb shaped core for example, you now have a light bulb shaped core with 6 to 8 holes drilled in it, some voids, some filled voids, but voids none the less. So you will never know for sure if it is the drilling pattern you like or not.
As far as how to drill the ball and what pin locations, cg placement, mass bias placement etc.. there is a great article in
Bowlers Journal this month where Mo Pinel describes in detail his Dual Angle system for laying out bowling balls. It is worth a years subscription, check it out at
www.bowlersjournal.com